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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 3control
Date released
  • 30June, 2019
  • 18July, 2019
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 2October, 2019
  • 1February, 2023
  • 1October, 2017
Available data
  • 50bigWig
  • 47bam
  • 35bed bed3+
  • 33bed narrowPeak
  • 33bigBed narrowPeak
  • 32bed broadPeak
  • 32bigBed broadPeak
  • 26tsv
  • 3fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
Organism
  • 68Homo sapiens
Biosample type
  • 56tissue
  • 12primary cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 68AMP
Genome assembly (visualization)
  • 46GRCh38
  • 41hg19
Lab
  • 68AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

68 results

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Clear Filters
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain14111
frontal cortex2211
cerebellum (Hemisphere)1111
Ammon's horn111
caudate nucleus11
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
cerebellar granule cell2
choroid plexus epithelial cell11
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