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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 34DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Date released
  • 455February, 2021
  • 18July, 2019
  • 14February, 2023
  • 8August, 2017
  • 6June, 2019
  • 6November, 2020
  • 5August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 495bigWig
  • 491bam
  • 478tsv
  • 17bed narrowPeak
  • 16bed bed3+
  • 13bigBed narrowPeak
  • 11fastq
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 530Homo sapiens
Biosample type
  • 473tissue
  • 30in vitro differentiated cells
  • 27primary cell
  • 1stem cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 530AMP
  • 1T1D
Genome assembly (visualization)
  • 513hg19
  • 491GRCh38
Lab
  • 526AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

531 results

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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue382331
bone tissue58
subcutaneous adipose tissue7111
omental fat pad5121
subcutaneous abdominal adipose tissue3
in vitro differentiated cells
adipocyte5811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast5211
cardiac fibroblast31
pancreatic stellate cell4
brain pericyte11
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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