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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 201Transcription
  • 123DNA accessibility
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 80May, 2022
  • 52February, 2023
  • 40September, 2018
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 22May, 2021
  • 19September, 2020
  • 14June, 2019
  • 13July, 2019
  • 11October, 2019
  • 7August, 2020
  • 6December, 2019
  • 6November, 2020
  • 5March, 2020
  • 5September, 2017
  • 3August, 2017
  • 3August, 2018
  • 3November, 2019
  • 3October, 2022
  • 2August, 2021
  • 2October, 2018
  • 1June, 2018
Available data
  • 200bigWig
  • 188bam
  • 185fastq
  • 156tsv
  • 80zippedFastqFolder
  • 54bed narrowPeak
  • 40bigBed narrowPeak
  • 18bed bed3+
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 394Homo sapiens
Biosample type
  • 314primary cell
  • 64cell line
  • 15tissue
  • 2in vitro differentiated cells
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 241AMP
  • 152HPAP
  • 2T1D
Genome assembly (visualization)
  • 210hg19
  • 197GRCh38
Lab
  • 237AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 66inconsistent ontology term
  • 5audit script error
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

395 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell523512311
pancreatic beta cell212312161
pancreatic acinar cell49121
pancreatic ductal cell4410
pancreatic delta cell11
cell line
EndoC_BH133191621
glomerular visceral epithelial cell11
tissue
pigmented layer of retina212
renal glomerulus1
in vitro differentiated cells
endothelial cell1
intermediate endothelial cell1
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