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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
6
pCHi-C
3
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
28
June, 2019
22
July, 2019
9
March, 2020
4
May, 2021
3
October, 2019
2
February, 2020
1
February, 2023
Available data
115
tsv
53
bam
53
bigWig
31
bed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
28
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
161
Homo sapiens
Biosample type
154
tissue
6
primary cell
1
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
1
T1D
Genome assembly (visualization)
53
GRCh38
49
hg19
Lab
160
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
organ_slims!
artery
BIOSAMPLE
ASSAY
161 results
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single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
3
4
1
2
1
1
heart
1
18
4
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
1
+ See 11 more…
primary cell
cardiac fibroblast
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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