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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Date released
  • 144May, 2020
  • 40May, 2022
  • 13August, 2021
  • 10July, 2019
  • 6August, 2017
  • 5December, 2019
  • 5January, 2019
  • 4November, 2018
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 2October, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 190bigWig
  • 174tsv
  • 171bam
  • 28bed narrowPeak
  • 13fastq
  • 7bed bed3+
  • 6bigBed narrowPeak
  • 5bed broadPeak
  • 5bigBed broadPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 239Homo sapiens
Biosample type
  • 206tissue
  • 23cell line
  • 10primary cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 239AMP
Genome assembly (visualization)
  • 196hg19
  • 171GRCh38
Lab
  • 186AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 13Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

239 results

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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver167202311111
right lobe of liver31212
cell line
HepG214112221
primary cell
hepatocyte511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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