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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • ChIP-seq
  • 152ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 173DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 157July, 2018
  • 104May, 2022
  • 94August, 2017
  • 57May, 2021
  • 56February, 2023
  • 42November, 2019
  • 40September, 2018
  • 39April, 2018
  • 32February, 2021
  • 19September, 2020
  • 11March, 2020
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 5October, 2019
  • 5September, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 491bam
  • 462bigWig
  • 417tsv
  • 324fastq
  • 80zippedFastqFolder
  • 74bed narrowPeak
  • 32bigBed narrowPeak
  • 9bed broadPeak
  • 8bed bed3+
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 727Homo sapiens
Biosample type
  • 388tissue
  • 276primary cell
  • 64cell line
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 546AMP
  • 152HPAP
  • 30T1D
Genome assembly (visualization)
  • 495hg19
  • 478GRCh38
Lab
  • 507AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 66inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

728 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans278586743111
body of pancreas34242
pancreas22412111
primary cell
pancreatic alpha cell523512311
pancreatic beta cell212312161
pancreatic acinar cell49121
pancreatic ductal cell4410
pancreatic delta cell11
cell line
EndoC_BH133196121
Panc111
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