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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
3
pCHi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
9
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Date released
9
July, 2019
5
June, 2019
5
March, 2020
4
August, 2021
4
October, 2019
1
February, 2020
1
May, 2021
Available data
16
bigWig
15
bam
11
tsv
9
bed bed3+
9
bed narrowPeak
8
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
29
Homo sapiens
Biosample type
17
tissue
12
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
1
T1D
Genome assembly (visualization)
18
hg19
13
GRCh38
Lab
28
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
organ_slims!
artery
embryo
BIOSAMPLE
ASSAY
29 results
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DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
pCHi-C
WGBS
ATAC-seq
FAIRE-seq
RRBS
tissue
aorta
1
1
4
1
2
ascending aorta
1
2
thoracic aorta
2
1
thymus
2
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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