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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 531ATAC-seq
  • 212DNase-seq
  • 84snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1RNA microarray
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 832DNA accessibility
  • 97DNA methylation
  • 75Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 187June, 2019
  • 146May, 2020
  • 140May, 2022
  • 111February, 2023
  • 91August, 2021
  • 59July, 2019
  • 58February, 2021
  • 52May, 2021
  • 46March, 2020
  • 46October, 2019
  • 28November, 2019
  • 26August, 2017
  • 17November, 2018
  • 16January, 2021
  • 14September, 2018
  • 11May, 2023
  • 10April, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 492bed narrowPeak
  • 479bam
  • 448bigWig
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 135fastq
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1105Homo sapiens
Biosample type
  • 554tissue
  • 435primary cell
  • 59cell line
  • 58in vitro differentiated cells
  • 7stem cell
Organ
  • 239pancreas
  • 192epithelium
  • 174kidney
  • 97heart
  • 69vasculature
  • 66blood vessel
  • 56connective tissue
  • 53limb
  • 51artery
  • 49liver
  • 49musculature of body
  • 47brain
  • 37eye
  • 18adipose tissue
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 9blood
  • 9bodily fluid
  • 7nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 855AMP
  • 147HPAP
  • 96T1D
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 576hg19
  • 531GRCh38
  • 5hg18
Lab
  • 714AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 119Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 5Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 68inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1113 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
RNA microarray
...and 3 more
tissue
kidney75136111
islet of Langerhans68174311
coronary artery362
liver2023111
heart1811
primary cell
pancreatic alpha cell35311
Langerhans cell48
pancreatic beta cell23161
naive thymus-derived CD4-positive, alpha-beta T cell221
CD4-positive, alpha-beta memory T cell22
cell line
EndoC_BH11912321
HepG211522
smooth muscle cell of the coronary artery8
EndoC-BH1
Panc111
in vitro differentiated cells
adipocyte811
neural progenitor cell10
embryonic stem cell61
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes (cardiac muscle cell)122
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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