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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 531ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 831DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 187June, 2019
  • 146May, 2020
  • 140May, 2022
  • 110February, 2023
  • 90August, 2021
  • 59July, 2019
  • 58February, 2021
  • 52May, 2021
  • 46March, 2020
  • 46October, 2019
  • 28November, 2019
  • 26August, 2017
  • 17November, 2018
  • 16January, 2021
  • 14September, 2018
  • 11May, 2023
  • 9April, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5September, 2017
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2023
Available data
  • 492bed narrowPeak
  • 479bam
  • 448bigWig
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 135fastq
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1105Homo sapiens
Biosample type
  • 552tissue
  • 435primary cell
  • 58in vitro differentiated cells
  • 55cell line
  • 5stem cell
Organ
  • 238pancreas
  • 191epithelium
  • 174kidney
  • 97heart
  • 69vasculature
  • 66blood vessel
  • 55connective tissue
  • 53limb
  • 51artery
  • 49liver
  • 49musculature of body
  • 47brain
  • 37eye
  • 18ureter
  • 17adipose tissue
  • 13bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 7nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 852AMP
  • 147HPAP
  • 96T1D
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 576hg19
  • 531GRCh38
  • 5hg18
Lab
  • 711AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 119Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 5Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 68inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

1105 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
kidney75136111
islet of Langerhans68174311
coronary artery362
liver2023111
heart1811
primary cell
pancreatic alpha cell35311
Langerhans cell48
pancreatic beta cell23161
naive thymus-derived CD4-positive, alpha-beta T cell221
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
adipocyte811
neural progenitor cell10
embryonic stem cell61
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes (cardiac muscle cell)122
cell line
EndoC_BH1191232
HepG2115221
smooth muscle cell of the coronary artery8
Panc111
GM128781
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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