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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1628Transcription
  • 692DNA accessibility
  • 96DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 6control
  • 3nucleotide modification
Date released
  • 696February, 2021
  • 253August, 2021
  • 203May, 2020
  • 198May, 2022
  • 164June, 2019
  • 161May, 2021
  • 158February, 2023
  • 124July, 2018
  • 114August, 2017
  • 72July, 2019
  • 63October, 2019
  • 59September, 2020
  • 47November, 2019
  • 47September, 2023
  • 40September, 2018
  • 31March, 2020
  • 19April, 2020
  • 16November, 2018
  • 15May, 2023
  • 14February, 2018
  • 14January, 2021
  • 12November, 2020
  • 10April, 2018
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 7October, 2017
  • 5January, 2019
  • 5September, 2017
  • 4March, 2023
  • 2June, 2018
  • 2October, 2018
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1October, 2022
Available data
  • 1489bam
  • 1455bigWig
  • 1298tsv
  • 449bed narrowPeak
  • 410fastq
  • 210bigBed narrowPeak
  • 189bed bed3+
  • 182bed broadPeak
  • 182bigBed broadPeak
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 2ibed
  • 1tar
  • 1vcf
Organism
  • 2576Homo sapiens
Biosample type
  • 1709tissue
  • 568primary cell
  • 178cell line
  • 123in vitro differentiated cells
  • 6stem cell
Organ
  • 613pancreas
  • 492connective tissue
  • 405adipose tissue
  • 318epithelium
  • 284kidney
  • 234heart
  • 233liver
  • 151bone element
  • 127vasculature
  • 124blood vessel
  • 103artery
  • 53eye
  • 53limb
  • 48musculature of body
  • 35brain
  • 19lung
  • 18ureter
  • 13embryo
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 7nerve
  • 4spleen
  • 4vein
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 2127AMP
  • 321HPAP
  • 66T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1582GRCh38
  • 1561hg19
  • 5hg18
Lab
  • 1894AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 92Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 16Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 250inconsistent ontology term
  • 38audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2584 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
FAIRE-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
adipose tissue38213
islet of Langerhans2825054111
kidney49756411611
liver1652013111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell5235131
pancreatic beta cell2123116
monocyte28131
exocrine cell39
cell line
EndoC_BH13319163221
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
in vitro differentiated cells
cardiomyocytes47
cardiac precursors (cardiac muscle cell)1911
adipocyte441
cardiomyocytes (cardiac muscle cell)21212
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
SB Ad3.11
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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