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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1861Transcription
  • 712DNA accessibility
  • 70DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 2control
  • 2nucleotide modification
Date released
  • 677February, 2021
  • 260August, 2021
  • 235May, 2020
  • 221May, 2021
  • 200May, 2022
  • 199February, 2023
  • 171June, 2019
  • 167July, 2018
  • 108August, 2017
  • 84July, 2019
  • 59September, 2020
  • 54October, 2019
  • 49April, 2018
  • 47September, 2023
  • 46March, 2020
  • 41September, 2018
  • 25February, 2020
  • 25November, 2019
  • 19April, 2020
  • 17November, 2018
  • 15February, 2018
  • 15May, 2023
  • 13January, 2021
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3December, 2019
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
Available data
  • 1709bam
  • 1690bigWig
  • 1531tsv
  • 481fastq
  • 441bed narrowPeak
  • 218bigBed narrowPeak
  • 196bed bed3+
  • 188bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1vcf
Organism
  • 2804Homo sapiens
Biosample type
  • 1829tissue
  • 693primary cell
  • 152in vitro differentiated cells
  • 131cell line
  • 7stem cell
Organ
  • 686pancreas
  • 521connective tissue
  • 418adipose tissue
  • 353epithelium
  • 279kidney
  • 254heart
  • 217liver
  • 158bone element
  • 126blood vessel
  • 126vasculature
  • 107artery
  • 56limb
  • 54brain
  • 54eye
  • 54musculature of body
  • 20lung
  • 18ureter
  • 16skeleton
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 7embryo
  • 5spleen
  • 3vein
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2288AMP
  • 318HPAP
  • 135T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1767hg19
  • 1758GRCh38
  • 5hg18
Lab
  • 2047AMP-T2D consortium
  • 318Klaus Kaestner, Upenn
  • 170Kyle Gaulton, UCSD
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 16Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 236inconsistent ontology term
  • 40audit script error
assay_title!
  • ChIP-seq
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2812 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
GRO-seq
Capture-C
FAIRE-seq
MeRIP-seq
snDrop-seq
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 6 more
tissue
adipose tissue382331
islet of Langerhans292496164314
kidney49756413211
liver16620123111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell523512251
pancreatic beta cell212312161
monocyte5415
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
neural progenitor cell710
embryonic stem cell751
adipocyte541
induced pluripotent stem cell9
cell line
smooth muscle cell of the coronary artery528
EndoC_BH131171221
HepG291
EndoC-BH1
GM128781
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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