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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 144May, 2020
  • 86May, 2021
  • 60July, 2019
  • 53February, 2023
  • 45July, 2018
  • 45March, 2020
  • 41February, 2021
  • 39April, 2018
  • 39August, 2021
  • 39June, 2019
  • 27October, 2019
  • 25February, 2020
  • 24November, 2019
  • 10November, 2020
  • 8August, 2017
  • 7December, 2019
  • 5January, 2019
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3November, 2018
  • 3October, 2022
  • 2May, 2022
  • 1December, 2018
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1October, 2017
  • 1September, 2018
Available data
  • 430bam
  • 413bigWig
  • 371tsv
  • 111fastq
  • 94bed narrowPeak
  • 55bed bed3+
  • 54bigBed narrowPeak
  • 46bed broadPeak
  • 44bigBed broadPeak
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tar
Organism
  • 724Homo sapiens
Biosample type
  • 357primary cell
  • 202tissue
  • 117in vitro differentiated cells
  • 47cell line
  • 1stem cell
Organ
  • 157pancreas
  • 119epithelium
  • 49connective tissue
  • 47brain
  • 41kidney
  • 30heart
  • 28liver
  • 15vasculature
  • 13adipose tissue
  • 12blood vessel
  • 12musculature of body
  • 10embryo
  • 9bone element
  • 8skeleton
  • 5eye
  • 4artery
  • 3limb
  • 3vein
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 603AMP
  • 111T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 488hg19
  • 382GRCh38
Lab
  • 565AMP-T2D consortium
  • 116Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 8Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 102inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

724 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte26211
naive thymus-derived CD4-positive, alpha-beta T cell1221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
macrophage111
tissue
islet of Langerhans1037612134
heart31411
kidney2141
liver31111
pancreas111121
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
cardiomyocytes12
adipocyte1811
embryonic stem cell551
cell line
EndoC_BH12263
HepG2512112
H1-hESC8
HEK293T2
Panc111
stem cell
mesenchymal stem cell1
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