Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 140DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 2control
  • 2nucleotide modification
Date released
  • 88May, 2020
  • 73May, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 30March, 2020
  • 25February, 2020
  • 23August, 2021
  • 23June, 2019
  • 11February, 2021
  • 9October, 2019
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 1August, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2017
  • 1September, 2018
Available data
  • 325bam
  • 324bigWig
  • 302tsv
  • 91fastq
  • 43bed narrowPeak
  • 31bed bed3+
  • 31bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
Organism
  • 476Homo sapiens
Biosample type
  • 241primary cell
  • 161tissue
  • 73in vitro differentiated cells
  • 1stem cell
Organ
  • 115pancreas
  • 77epithelium
  • 39connective tissue
  • 33brain
  • 25heart
  • 18kidney
  • 13adipose tissue
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 6liver
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 382AMP
  • 90T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 347hg19
  • 279GRCh38
Lab
  • 359AMP-T2D consortium
  • 97Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 44inconsistent ontology term
  • 4audit script error
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

476 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte2621
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans101861224
heart21411
frontal cortex2211
liver2111
pancreas1111
in vitro differentiated cells
neural progenitor cell710
cardiomyocytes12
embryonic stem cell541
induced pluripotent stem cell9
adipocyte141
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego