Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 120DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 6control
  • 3nucleotide modification
Date released
  • 56May, 2020
  • 30February, 2021
  • 24July, 2019
  • 23November, 2019
  • 18October, 2019
  • 16August, 2021
  • 16June, 2019
  • 15March, 2020
  • 13May, 2021
  • 7August, 2017
  • 7December, 2019
  • 6February, 2023
  • 6November, 2020
  • 5January, 2019
  • 3January, 2021
  • 1December, 2018
  • 1July, 2018
  • 1November, 2018
Available data
  • 105bam
  • 89bigWig
  • 69tsv
  • 51bed narrowPeak
  • 24bed bed3+
  • 23bigBed narrowPeak
  • 20bed bedMethyl
  • 20bed broadPeak
  • 20bigBed bedMethyl
  • 20bigBed broadPeak
  • 20fastq
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 3txt
  • 2ibed
  • 1bed bed3
  • 1tar
Organism
  • 248Homo sapiens
Biosample type
  • 116primary cell
  • 47cell line
  • 44in vitro differentiated cells
  • 41tissue
Organ
  • 42epithelium
  • 42pancreas
  • 23kidney
  • 22liver
  • 14brain
  • 10connective tissue
  • 8embryo
  • 8vasculature
  • 5blood vessel
  • 5heart
  • 3musculature of body
  • 2eye
  • 2vein
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 221AMP
  • 21T1D
  • 6HPAP
Genome assembly (visualization)
  • 141hg19
  • 103GRCh38
Lab
  • 206AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 58inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

248 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
hepatocyte51
pancreatic alpha cell6
cell line
EndoC_BH12263
HepG2152112
H1-hESC8
HEK293T2
Panc111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
lymphocyte of B lineage (iPSC)111
tissue
islet of Langerhans1911
kidney14
pancreas12
brain11
liver11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego