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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1571Transcription
  • 572DNA accessibility
  • 69DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Date released
  • 666February, 2021
  • 237August, 2021
  • 198May, 2022
  • 152February, 2023
  • 148June, 2019
  • 148May, 2021
  • 147May, 2020
  • 123July, 2018
  • 107August, 2017
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 45October, 2019
  • 40September, 2018
  • 24November, 2019
  • 19April, 2020
  • 16March, 2020
  • 15May, 2023
  • 15November, 2018
  • 14February, 2018
  • 11January, 2021
  • 10April, 2018
  • 8January, 2018
  • 7August, 2020
  • 7October, 2017
  • 6November, 2020
  • 5September, 2017
  • 4March, 2023
  • 3December, 2019
  • 2June, 2018
  • 2October, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 1384bam
  • 1366bigWig
  • 1229tsv
  • 398bed narrowPeak
  • 390fastq
  • 187bigBed narrowPeak
  • 165bed bed3+
  • 162bed broadPeak
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 2328Homo sapiens
Biosample type
  • 1668tissue
  • 452primary cell
  • 131cell line
  • 79in vitro differentiated cells
  • 6stem cell
Organ
  • 571pancreas
  • 482connective tissue
  • 405adipose tissue
  • 276epithelium
  • 261kidney
  • 229heart
  • 211liver
  • 150bone element
  • 119blood vessel
  • 119vasculature
  • 103artery
  • 53limb
  • 51eye
  • 45musculature of body
  • 21brain
  • 19lung
  • 18ureter
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 7nerve
  • 5embryo
  • 4spleen
  • 2vein
  • 1pituitary gland
  • 1skin of body
Project
  • 1906AMP
  • 315HPAP
  • 47KPMP
  • 45T1D
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1479GRCh38
  • 1420hg19
  • 5hg18
Lab
  • 1688AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 138Katalin Susztak, Upenn
  • 73Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 12Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 192inconsistent ontology term
  • 36audit script error
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

2336 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
GRO-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
FAIRE-seq
MPRA
STARR-seq
...and 4 more
tissue
adipose tissue38213
islet of Langerhans282314141
kidney4975641121
liver164201311
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell5235125
pancreatic beta cell2123116
monocyte2813
exocrine cell39
cell line
smooth muscle cell of the coronary artery528
EndoC_BH131171221
HepG291
EndoC-BH1
GM128781
in vitro differentiated cells
cardiomyocytes47
chondrocyte5
pancreatic endoderm41
adipocyte4
definitive endodermal cell21
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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