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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
211
bam
190
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
26
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
237
tissue
15
primary cell
Organ
936
pancreas
783
liver
674
connective tissue
499
epithelium
489
adipose tissue
361
heart
269
kidney
252
brain
224
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
37
embryo
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
185
GRCh38
140
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNAme array
DNase-seq
RRBS
organ_slims!
spleen
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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