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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
DNase-seq
Assay category
181
DNA binding
116
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
61
August, 2017
42
August, 2021
37
February, 2018
34
December, 2017
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
251
bam
219
bigWig
123
fastq
114
bed narrowPeak
109
tsv
40
tagAlign
17
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
350
Homo sapiens
Biosample type
2048
tissue
1003
primary cell
538
cell line
350
in vitro differentiated cells
8
stem cell
Organ
82
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
350
AMP
Genome assembly (visualization)
253
hg19
225
GRCh38
4
hg18
Lab
296
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
96
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
assay_title!
DNAme array
DNase-seq
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2021
BIOSAMPLE
ASSAY
350 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
61
1
4
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
16
4
1
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