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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
65
ChIP-seq
Assay category
65
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
55
November, 2017
8
August, 2017
2
October, 2019
Available data
2778
bam
2512
bigWig
1600
tsv
1231
fastq
1179
bed narrowPeak
684
bigBed narrowPeak
224
tagAlign
161
txt
153
zippedFastqFolder
87
bed broadPeak
65
bigBed broadPeak
64
xls
56
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
65
Homo sapiens
Biosample type
52
cell line
13
primary cell
Organ
52
liver
4
epithelium
4
vasculature
3
blood vessel
3
brain
2
vein
Project
65
AMP
Genome assembly (visualization)
65
hg19
49
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
DNase-seq
month_released!
January, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
cell line
HepG2
52
primary cell
skeletal muscle myoblast
8
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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