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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ChIP-seq
5
total RNA-seq
2
STARR-seq
2
pCHi-C
1
ATAC-seq
Hi-C
1
WGBS
Assay category
335
DNA binding
5
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
287
transcription factor
81
recombinant protein
53
RNA binding protein
30
control
20
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
289
November, 2017
45
November, 2018
5
January, 2019
4
August, 2021
2
February, 2021
1
May, 2020
Available data
339
bam
339
fastq
316
bigWig
296
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
6
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
346
Homo sapiens
Biosample type
346
cell line
Organ
346
liver
Project
346
AMP
Genome assembly (visualization)
313
hg19
268
GRCh38
Lab
342
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNAme array
Hi-C
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
ATAC-seq
WGBS
cell line
HepG2
335
5
2
2
1
1
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