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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
15
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
15
histone
15
histone modification
11
narrow histone mark
4
broad histone mark
Date released
13
November, 2017
12
February, 2020
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
215
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
36
Homo sapiens
Biosample type
32
tissue
4
primary cell
Organ
229
pancreas
208
kidney
207
epithelium
182
heart
108
liver
92
bone element
90
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
39
artery
39
musculature of body
36
brain
20
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNAme array
STARR-seq
files.file_type!
bam
lab.title!
Kyle Gaulton, UCSD
month_released!
October, 2017
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
brain
1
1
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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