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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
2
ATAC-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
40
DNA binding
36
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
2
October, 2019
1
January, 2018
Available data
64
bigWig
61
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
16
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
88
Homo sapiens
Biosample type
77
tissue
11
primary cell
Organ
940
pancreas
779
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
341
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
69
hg19
49
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
DNAme array
STARR-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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