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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
55
ChIP-seq
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
94
DNA accessibility
73
Transcription
55
DNA binding
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
56
February, 2023
45
May, 2022
29
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
4
August, 2021
4
July, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
98
fastq
50
bam
39
zippedFastqFolder
12
bigWig
6
txt
5
tagAlign
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
235
Homo sapiens
Biosample type
114
primary cell
88
tissue
34
cell line
1
in vitro differentiated cells
Organ
237
pancreas
225
kidney
197
heart
166
epithelium
161
liver
122
brain
89
bone element
89
connective tissue
69
blood vessel
69
vasculature
59
adipose tissue
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
102
HPAP
28
T1D
Genome assembly (visualization)
hg19
631
GRCh38
Lab
102
Klaus Kaestner, Upenn
88
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assay_title!
DNAme array
WGBS
assembly!
hg19
BIOSAMPLE
ASSAY
237 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
pancreatic beta cell
16
11
6
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
19
7
4
1
body of pancreas
1
9
2
pancreas
1
3
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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