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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
73
DNA binding
7
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
tsv
44
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
88
Homo sapiens
Biosample type
88
tissue
1
in vitro differentiated cells
Organ
617
liver
473
pancreas
330
kidney
318
epithelium
259
brain
192
connective tissue
189
heart
133
vasculature
127
blood vessel
115
limb
93
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
48
artery
38
nerve
29
eye
24
spleen
23
embryo
22
vein
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
89
AMP
Genome assembly (visualization)
27
hg19
26
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNAme array
siRNA RNA-seq
files.file_type!
tsv
month_released!
February, 2023
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
2
1
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in vitro differentiated cells
white fat cell
1
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