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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
197
ATAC-seq
187
single cell RNA-seq
138
ChIP-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
283
DNA accessibility
138
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
112
histone
112
histone modification
61
broad histone mark
51
narrow histone mark
21
control
8
RNA binding protein
8
transcription factor
Date released
147
May, 2020
134
May, 2022
121
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
August, 2017
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
567
bigWig
551
bam
351
fastq
270
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
940
Homo sapiens
Biosample type
2311
tissue
940
primary cell
642
cell line
300
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
305
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
495
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
494
hg19
407
GRCh38
Lab
460
AMP-T2D consortium
324
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
assay_title!
DNAme array
snDrop-seq
files.file_type!
tagAlign
month_released!
August, 2017
BIOSAMPLE
ASSAY
940 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
monocyte
54
15
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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