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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
179
ChIP-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
285
DNA accessibility
179
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
121
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
33
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
602
bigWig
597
bam
409
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
977
Homo sapiens
Biosample type
2245
tissue
977
primary cell
339
in vitro differentiated cells
253
cell line
10
stem cell
Organ
402
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
532
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
519
hg19
430
GRCh38
Lab
497
AMP-T2D consortium
324
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNAme array
snDrop-seq
files.file_type!
tagAlign
organ_slims!
liver
BIOSAMPLE
ASSAY
977 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
1
monocyte
54
15
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
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