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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
29
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
52
DNA accessibility
46
DNA binding
Target of assay
36
histone
36
histone modification
21
narrow histone mark
15
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
14
September, 2018
13
October, 2019
8
August, 2017
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
98
Homo sapiens
Biosample type
504
tissue
346
cell line
98
primary cell
17
in vitro differentiated cells
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
98
AMP
Genome assembly (visualization)
94
GRCh38
91
hg19
Lab
98
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
DNAme array
snDrop-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
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