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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
57
DNA binding
3
DNA accessibility
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
38
October, 2019
13
December, 2017
9
February, 2018
1
January, 2018
Available data
60
bam
42
bigWig
41
bed narrowPeak
26
bigBed narrowPeak
23
fastq
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
38
tissue
23
in vitro differentiated cells
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
1
hg18
Lab
61
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
DNAme array
total RNA-seq
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
2
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
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