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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
32
ATAC-seq
20
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
4
WGBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
55
DNA binding
45
DNA accessibility
20
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
29
August, 2017
19
February, 2023
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
May, 2022
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
54
bam
39
fastq
6
bigWig
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
137
Homo sapiens
Biosample type
92
tissue
34
cell line
12
primary cell
1
in vitro differentiated cells
Organ
225
kidney
205
heart
166
liver
139
pancreas
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
64
epithelium
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
28
T1D
Genome assembly (visualization)
hg19
625
GRCh38
Lab
Klaus Kaestner, Upenn
92
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assay_title!
DNAme array
assembly!
hg19
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
WGBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
tissue
islet of Langerhans
19
16
18
7
4
1
body of pancreas
9
1
2
2
pancreas
3
1
4
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
16
6
2
1
Panc1
7
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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