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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
40
histone
40
histone modification
36
transcription factor
21
broad histone mark
19
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
20
November, 2017
17
August, 2017
3
October, 2017
Available data
801
bigWig
787
bed narrowPeak
767
bam
390
bigBed narrowPeak
237
tagAlign
226
fastq
40
bed broadPeak
26
bigBed broadPeak
25
bed bed3+
1
tagAlign bed3+
Organism
34
Homo sapiens
Biosample type
14
primary cell
14
tissue
12
cell line
Organ
12
liver
11
brain
6
pancreas
2
epithelium
2
vasculature
1
blood vessel
Project
40
AMP
Genome assembly (visualization)
65
hg19
40
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
assay_title!
DNAme array
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
primary cell
skeletal muscle myoblast
11
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
tissue
pancreas
6
brain
3
middle frontal area 46
2
caudate nucleus
1
cingulate gyrus
1
+ See 1 more…
cell line
HepG2
12
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