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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
5
total RNA-seq
2
RNA microarray
1
single cell RNA-seq
Assay category
90
DNA binding
6
Transcription
Target of assay
42
transcription factor
29
histone
29
histone modification
19
control
15
broad histone mark
14
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
308
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
95
bam
90
fastq
75
bigWig
70
bed narrowPeak
50
bigBed narrowPeak
15
bed bed3+
7
tsv
Organism
98
Homo sapiens
Biosample type
51
tissue
39
in vitro differentiated cells
5
primary cell
3
stem cell
Organ
68
liver
21
epithelium
9
embryo
3
kidney
Project
98
AMP
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
98
AMP-T2D consortium
Audit category:
27
inconsistent control
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
DNAme array
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
single cell RNA-seq
tissue
liver
38
right lobe of liver
10
kidney
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
primary cell
hepatocyte
5
stem cell
hESC
3
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