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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
28
ATAC-seq
14
total RNA-seq
2
Capture-C
Assay category
70
DNA binding
28
DNA accessibility
14
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
83
May, 2021
24
May, 2022
4
August, 2021
3
February, 2023
Available data
52
bed narrowPeak
45
bigWig
24
bam
24
fastq
9
txt
4
bed bed3+
3
bed bedgraph
Organism
114
Homo sapiens
Biosample type
54
in vitro differentiated cells
35
primary cell
25
tissue
Organ
25
pancreas
4
connective tissue
Project
236
T1D
114
AMP
Genome assembly (visualization)
65
hg19
Lab
3902
AMP-T2D consortium
142
Katalin Susztak, Upenn
107
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
DNAme array
organ_slims!
small intestine
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
in vitro differentiated cells
embryonic stem cell
37
6
5
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
primary cell
CD8-positive, alpha-beta T cell
33
2
tissue
islet of Langerhans
18
6
pancreas
1
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