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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
112
total RNA-seq
29
ATAC-seq
11
DNase-seq
10
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
pCHi-C
Assay category
343
DNA binding
118
Transcription
42
DNA accessibility
13
DNA methylation
Target of assay
141
histone modification
140
histone
112
transcription factor
90
control
77
broad histone mark
62
narrow histone mark
21
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
229
August, 2017
94
December, 2017
58
October, 2018
39
February, 2018
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2135
bam
1976
bigWig
1153
tsv
1110
bed narrowPeak
578
bigBed narrowPeak
522
fastq
278
tagAlign
233
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
72
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
7
bed bedgraph
6
bed bed3
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
515
Homo sapiens
Biosample type
cell line
primary cell
377
tissue
141
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
98
connective tissue
98
liver
44
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
522
AMP
Genome assembly (visualization)
415
hg19
401
GRCh38
5
hg18
Lab
496
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
biosample_type!
cell line
primary cell
organ_slims!
bone element
BIOSAMPLE
ASSAY
522 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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