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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
13
ChIP-seq
Assay category
205
DNA accessibility
13
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
10
August, 2017
9
November, 2018
8
October, 2019
3
November, 2017
1
November, 2020
Available data
2422
bam
2226
bigWig
1481
tsv
1002
bed narrowPeak
829
fastq
548
bigBed narrowPeak
257
bed bed3+
240
bed broadPeak
218
bigBed broadPeak
209
tagAlign
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
218
Homo sapiens
Biosample type
176
tissue
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
6
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
218
AMP
Genome assembly (visualization)
214
GRCh38
195
hg19
Lab
218
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
DNAme array
biosample_type!
cell line
target.investigated_as!
narrow histone mark
nucleotide modification
BIOSAMPLE
ASSAY
218 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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