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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
50
ChIP-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
50
DNA binding
9
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
12
July, 2019
5
October, 2018
3
October, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
426
bigWig
424
bam
401
tsv
24
fastq
14
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
467
Homo sapiens
Biosample type
466
tissue
2
primary cell
in vitro differentiated cells
Organ
891
pancreas
669
liver
560
connective tissue
474
epithelium
466
adipose tissue
372
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
468
AMP
Genome assembly (visualization)
427
hg19
425
GRCh38
Lab
468
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNAme array
biosample_type!
in vitro differentiated cells
target.investigated_as!
control
BIOSAMPLE
ASSAY
468 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
omental fat pad
5
3
1
1
2
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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