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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
726
ChIP-seq
302
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
28
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1365
Transcription
726
DNA binding
513
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
740
histone modification
739
histone
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
286
August, 2017
264
August, 2021
166
May, 2020
163
June, 2019
160
May, 2021
121
October, 2019
120
July, 2018
111
February, 2023
82
May, 2019
77
July, 2019
76
December, 2017
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
45
March, 2020
45
November, 2019
31
February, 2018
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
January, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1914
bam
1723
bigWig
1206
tsv
810
bed narrowPeak
465
bigBed narrowPeak
457
fastq
220
bed bed3+
199
bed broadPeak
177
bigBed broadPeak
160
txt
156
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2783
Homo sapiens
Biosample type
2451
tissue
972
primary cell
643
cell line
339
in vitro differentiated cells
9
stem cell
Organ
615
connective tissue
477
adipose tissue
475
pancreas
327
liver
289
kidney
276
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
31
epithelium
23
spleen
21
embryo
20
lung
18
ureter
16
skeleton
2
intestine
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2696
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
1833
GRCh38
1773
hg19
4
hg18
Lab
2410
AMP-T2D consortium
142
Katalin Susztak, Upenn
88
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
202
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
27
missing controlled_by
Audit category:
18
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
organ_slims!
thymus
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2790 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
34
68
6
1
4
7
3
1
1
4
adipose tissue
382
1
3
1
3
liver
167
103
20
1
2
1
3
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
+ See 117 more…
in vitro differentiated cells
adipocyte
5
51
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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