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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
total RNA-seq
32
ChIP-seq
5
ATAC-seq
Assay category
84
Transcription
32
DNA binding
5
DNA accessibility
Target of assay
21
histone
21
histone modification
16
transcription factor
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
121
May, 2021
52
August, 2017
35
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
88
bigWig
84
bam
79
tsv
5
tagAlign
4
bed narrowPeak
Organism
121
Homo sapiens
Biosample type
153
primary cell
121
in vitro differentiated cells
40
tissue
20
cell line
Organ
4
epithelium
2
embryo
2
pancreas
1
connective tissue
1
heart
Project
121
AMP
Genome assembly (visualization)
88
hg19
83
GRCh38
Lab
84
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
68
inconsistent ontology term
assay_title!
DNAme array
files.file_type!
bedpe bed3+
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
27
5
induced pluripotent stem cell
9
pancreatic PP cell
2
cardiac fibroblast
1
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