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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
94
ChIP-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
94
DNA binding
43
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
105
May, 2021
35
August, 2021
31
February, 2018
30
August, 2017
26
February, 2021
19
December, 2017
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
213
bam
182
bigWig
131
tsv
75
fastq
60
bed narrowPeak
24
tagAlign
15
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
283
Homo sapiens
Biosample type
2349
tissue
958
primary cell
283
in vitro differentiated cells
280
cell line
9
stem cell
Organ
58
connective tissue
18
embryo
13
epithelium
8
liver
1
heart
1
pancreas
Project
283
AMP
Genome assembly (visualization)
214
hg19
188
GRCh38
4
hg18
Lab
251
AMP-T2D consortium
25
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
104
inconsistent ontology term
2
audit script error
Audit category:
5
inconsistent control read length
assay_title!
DNAme array
files.file_type!
bedpe bed3+
target.investigated_as!
narrow histone mark
transcription factor
BIOSAMPLE
ASSAY
283 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
29
8
1
1
embryonic stem cell
7
17
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
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