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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
66
ChIP-seq
29
total RNA-seq
9
RRBS
8
single cell RNA-seq
6
Hi-C
3
DNase-seq
2
small RNA-seq
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
133
DNA accessibility
66
DNA binding
39
Transcription
9
DNA methylation
6
3D chromatin structure
Target of assay
48
histone
48
histone modification
25
narrow histone mark
23
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
102
May, 2020
31
July, 2019
31
June, 2019
30
October, 2019
19
May, 2021
12
February, 2023
5
April, 2018
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
February, 2021
1
August, 2017
1
March, 2020
Available data
429
bam
388
bigWig
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
254
Homo sapiens
Biosample type
1881
tissue
254
primary cell
199
in vitro differentiated cells
187
cell line
4
stem cell
Organ
67
epithelium
29
connective tissue
26
kidney
23
vasculature
22
blood vessel
18
vein
13
musculature of body
12
liver
10
heart
7
brain
5
pancreas
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
254
AMP
Genome assembly (visualization)
162
hg19
99
GRCh38
Lab
254
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
1
audit script error
assay_title!
DNAme array
files.file_type!
bed broadPeak
fastq
BIOSAMPLE
ASSAY
254 results
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ATAC-seq
ChIP-seq
total RNA-seq
RRBS
single cell RNA-seq
Hi-C
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
15
2
1
monocyte
15
1
1
epithelial cell of proximal tubule
10
1
1
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