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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
ChIP-seq
247
total RNA-seq
200
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
DNAme array
Assay category
393
Transcription
285
DNA accessibility
261
DNA binding
57
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
April, 2018
31
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
554
bigWig
545
bam
370
fastq
281
bed narrowPeak
227
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
1021
Homo sapiens
Biosample type
2769
tissue
1021
primary cell
632
cell line
391
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
313
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
492
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
567
hg19
480
GRCh38
Lab
457
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNAme array
month_released!
April, 2018
organ_slims!
vein
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1021 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
primary cell
monocyte
85
54
15
1
pancreatic alpha cell
13
52
35
9
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
9
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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