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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
216
total RNA-seq
186
single cell RNA-seq
185
ATAC-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
DNAme array
1
FAIRE-seq
Assay category
404
Transcription
271
DNA accessibility
243
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
202
histone
202
histone modification
104
broad histone mark
98
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
530
bigWig
525
bam
336
fastq
243
bed narrowPeak
239
tsv
153
zippedFastqFolder
96
tagAlign
93
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
bed bed3
1
csv
1
tar
Organism
1000
Homo sapiens
Biosample type
2415
tissue
1000
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
471
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
543
hg19
453
GRCh38
Lab
436
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNAme array
month_released!
September, 2018
organ_slims!
large intestine
liver
BIOSAMPLE
ASSAY
1000 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
42
12
32
31
1
pancreatic beta cell
13
11
12
19
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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