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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
809
ChIP-seq
576
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
86
RNA microarray
27
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
DNase-seq
2
MeRIP-seq
Assay category
809
DNA binding
770
Transcription
287
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
583
histone modification
582
histone
305
narrow histone mark
277
broad histone mark
160
control
68
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
nucleotide modification
Date released
236
October, 2019
228
August, 2021
205
August, 2017
193
May, 2020
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
65
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
September, 2017
3
December, 2019
2
November, 2020
1
August, 2022
1
January, 2018
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2021
Homo sapiens
Biosample type
2029
tissue
1019
primary cell
656
cell line
285
in vitro differentiated cells
6
stem cell
Organ
connective tissue
482
adipose tissue
476
pancreas
355
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1932
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1181
GRCh38
1090
hg19
Lab
1679
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
files.file_type!
bed bed3+
organ_slims!
connective tissue
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
2029 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
DNase-seq
MeRIP-seq
tissue
islet of Langerhans
49
292
68
6
7
4
3
1
1
1
2
liver
142
167
20
1
1
3
1
1
1
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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