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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
110
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
95
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1743
bam
1623
bigWig
1006
tsv
823
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
7
txt
1
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
139
Homo sapiens
Biosample type
145
tissue
59
cell line
39
primary cell
1
in vitro differentiated cells
Organ
kidney
45
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
145
AMP
Genome assembly (visualization)
129
hg19
123
GRCh38
Lab
143
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
DNAme array
organ_slims!
bone element
kidney
BIOSAMPLE
ASSAY
145 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
13
+ See 36 more…
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