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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
960
total RNA-seq
790
ChIP-seq
246
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1156
Transcription
790
DNA binding
456
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
537
histone modification
536
histone
289
narrow histone mark
247
broad histone mark
165
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1717
bam
1610
bigWig
990
tsv
881
bed narrowPeak
468
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
4
hic
3
bedpe bed3+
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2455
Homo sapiens
Biosample type
2464
tissue
1080
primary cell
651
cell line
386
in vitro differentiated cells
6
stem cell
Organ
546
connective tissue
494
pancreas
487
adipose tissue
358
liver
299
kidney
285
heart
235
brain
bone element
115
limb
80
blood vessel
80
vasculature
70
musculature of body
68
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2371
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1692
GRCh38
1574
hg19
Lab
2112
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
5
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
month_released!
March, 2020
May, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
2464 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
290
69
66
6
1
7
1
3
4
1
4
adipose tissue
382
2
3
3
liver
166
145
20
1
2
3
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
2
35
2
18
3
4
1
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