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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
7
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
1
DNA accessibility
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
10
July, 2019
7
August, 2017
5
March, 2020
February, 2020
2
June, 2019
1
January, 2018
1
May, 2019
1
May, 2022
Available data
43
bam
41
bigWig
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
27
Homo sapiens
Biosample type
22
tissue
5
primary cell
Organ
777
pancreas
678
liver
577
connective tissue
451
adipose tissue
413
epithelium
263
heart
246
kidney
159
bone element
149
vasculature
146
blood vessel
115
artery
68
blood
68
bodily fluid
53
eye
52
brain
34
limb
27
musculature of body
24
embryo
20
lung
18
spleen
16
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNAme array
files.file_type!
bed bed3+
month_released!
February, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
3
4
1
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
4
muscle of leg
1
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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