Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
8
snATAC-seq
2
ATAC-seq
1
total RNA-seq
Assay category
61
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
2
October, 2019
1
January, 2018
1
July, 2019
Available data
62
bam
60
fastq
57
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
1
tsv
Organism
72
Homo sapiens
Biosample type
61
cell line
9
primary cell
2
tissue
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
8
T1D
Genome assembly (visualization)
57
hg19
56
GRCh38
Lab
64
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
DNAme array
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
72 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
total RNA-seq
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
pericardium fibroblast
1
tissue
islet of Langerhans
1
pituitary gland
1
Download