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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
40
ChIP-seq
3
Hi-C
Assay category
177
Transcription
97
DNA accessibility
47
DNA methylation
40
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
40
May, 2024
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
50
bigWig
40
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
364
Homo sapiens
Biosample type
324
primary cell
40
tissue
Organ
152
epithelium
152
pancreas
40
heart
Project
324
HPAP
40
AMP
Genome assembly (visualization)
50
GRCh38
3
hg19
Lab
3892
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
DNAme array
files.file_type!
tagAlign bed3+
organ_slims!
ureter
BIOSAMPLE
ASSAY
364 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
left cardiac atrium
40
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