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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
81
total RNA-seq
66
single cell RNA-seq
32
ATAC-seq
17
DNase-seq
6
WGBS
1
FAIRE-seq
Assay category
147
Transcription
86
DNA binding
50
DNA accessibility
6
DNA methylation
Target of assay
64
histone
64
histone modification
34
narrow histone mark
30
broad histone mark
15
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
September, 2020
18
June, 2019
15
December, 2017
14
October, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2018
2
October, 2018
1
June, 2018
Available data
313
bam
299
bigWig
253
fastq
156
tsv
149
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
289
Homo sapiens
Biosample type
273
primary cell
15
in vitro differentiated cells
1
cell line
Organ
497
pancreas
467
liver
293
epithelium
134
brain
120
connective tissue
104
kidney
94
heart
85
vasculature
84
limb
80
blood vessel
60
blood
60
bodily fluid
49
musculature of body
46
adipose tissue
embryo
26
nerve
25
artery
24
spleen
18
ureter
13
vein
6
eye
Project
220
AMP
69
HPAP
Genome assembly (visualization)
214
GRCh38
201
hg19
Lab
220
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
DNAme array
organ_slims!
embryo
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
13
6
pancreatic beta cell
13
21
12
10
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
endothelial cell of umbilical vein
10
2
1
+ See 16 more…
in vitro differentiated cells
hepatocyte
15
cell line
glomerular visceral epithelial cell
1
See all biosamples
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