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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
7
DNase-seq
3
WGBS
1
single cell RNA-seq
Assay category
188
DNA binding
7
DNA accessibility
3
DNA methylation
1
Transcription
Target of assay
91
histone
91
histone modification
69
transcription factor
58
broad histone mark
33
narrow histone mark
28
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
683
February, 2021
406
November, 2017
341
May, 2020
337
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
198
bam
169
bigWig
166
bed narrowPeak
166
bigBed narrowPeak
81
fastq
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
csv
Organism
199
Homo sapiens
Biosample type
132
tissue
61
cell line
6
primary cell
Organ
53
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
pancreas
9
spleen
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
Project
199
AMP
Genome assembly (visualization)
168
GRCh38
164
hg19
Lab
199
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNAme array
organ_slims!
pancreas
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 10 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic cell
1
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