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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
8
snATAC-seq
2
ATAC-seq
1
RRBS
1
total RNA-seq
Assay category
10
DNA accessibility
10
DNA binding
1
DNA methylation
1
Transcription
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
2
July, 2019
2
October, 2019
1
January, 2018
Available data
11
bam
9
fastq
6
bigWig
4
bed narrowPeak
3
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
1
tsv
Organism
22
Homo sapiens
Biosample type
10
cell line
9
primary cell
3
tissue
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
14
AMP
8
T1D
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
14
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
DNAme array
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
snATAC-seq
ATAC-seq
RRBS
total RNA-seq
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
pericardium fibroblast
1
tissue
islet of Langerhans
1
pericardium
1
pituitary gland
1
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