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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
6
DNase-seq
4
ChIP-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
19
Transcription
4
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
31
February, 2023
25
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
35
bed narrowPeak
11
bam
8
bigBed narrowPeak
8
bigWig
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
65
Homo sapiens
Biosample type
54
tissue
11
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
38
hg19
7
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNAme array
organ_slims!
stomach
target.investigated_as!
histone
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
2
2
2
1
retinal pigment epithelial cell
1
2
1
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